Independent Report – A U.S. federal judge has blocked a recent policy from the National Science Foundation (NSF) that would have sharply limited how much funding universities receive to cover indirect research costs. This decision represents a legal victory for academic institutions and a setback for the Trump administration’s broader effort to reduce federal support for NSF-backed scientific research.
The NSF, a federal agency with an annual budget of around $9 billion dedicated to scientific research, introduced a new policy in May. This policy aimed to cap the reimbursement for indirect costs—such as administrative expenses and facility maintenance—at a flat rate of 15% of the direct research grant amount. Traditionally, universities had negotiated with the NSF for a higher percentage based on actual needs, which often ranged from 50% to 65%.
Judge Talwani found the policy to be “arbitrary and capricious,” deeming it unlawful. Her ruling invalidates the NSF’s attempt to impose a blanket cap on indirect cost reimbursements without considering the established agreements and the actual expenses of universities. Talwani was appointed by former President Barack Obama.
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The policy sparked immediate backlash from the academic community. A coalition of 13 prominent research universities and several academic trade associations filed a lawsuit against the NSF shortly after the policy was announced. Among the plaintiffs were institutions such as the Massachusetts Institute of Technology (MIT), Princeton University, Brown University, the University of California system, Carnegie Mellon University, Cornell University, the University of Michigan, and the University of Pennsylvania.
These universities argued that limiting indirect cost reimbursements would severely affect their ability to conduct high-quality scientific research. They emphasized that essential services such as laboratory maintenance, electricity, administrative staffing, and building operations are all covered under indirect costs. Reducing support for these areas, they claimed, would compromise the infrastructure that makes groundbreaking research possible.
Before implementing the cap, NSF officials noted that indirect costs had risen to over $1 billion annually out of its $4.22 billion in grant spending directed to higher education. The Trump administration justified the policy as a cost-control measure meant to rein in what it considered excessive spending on overhead rather than research itself.
However, Judge Talwani’s ruling underscores the importance of procedural fairness and adherence to established norms in policymaking. By bypassing the usual negotiation process and implementing a sweeping cap, the NSF failed to account for the diversity of institutional needs and prior agreements, the judge stated.
The lawsuit against the NSF follows similar legal challenges brought against other federal agencies. Earlier in the year, courts had blocked funding restrictions imposed by the National Institutes of Health (NIH) and the U.S. Department of Energy. These efforts were also part of broader attempts by the Trump administration to curtail funding for initiatives they viewed as supporting diversity, equity, and inclusion.
In a related development, a judge this week also temporarily blocked a similar 15% cap imposed by the Department of Defense, pending a full hearing scheduled for July 2. Additionally, another judge in Boston recently ordered the NIH to reinstate hundreds of canceled grants related to diversity-focused research.
Despite the NSF’s assertion that limiting indirect costs would free up funds for direct research, many academic institutions remain concerned that such cuts would ultimately hinder innovation. They argue that strong administrative and technical support is vital for researchers to carry out their work effectively and to maintain America’s position as a global leader in science and technology.
As of now, neither the NSF nor the White House has issued a public response to Judge Talwani’s decision. The ruling signals that any significant shift in federal research funding policy will likely face heavy scrutiny from both the judiciary and the scientific community.
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